PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa018449
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 784aa    MW: 87051.5 Da    PI: 7.2761
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-27145PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.9e-19259359199
                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+kvl+ sd+++ grlvlpk +ae++   ++++e+  ++++d +g++W +++++  +++s++yvl+ G     ++ +Lk+gD+v+F++++  e++l++++
  Lsa018449 259 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPIRIQDVKGKEWLFQFRFwpNNNSRMYVLE-GVTPCIQSMQLKAGDTVTFSRME-PEGKLLMGF 356
                99**************************555566778***************9989999999***9.********************876.888888888 PP

                E-S CS
         B3  97 frk 99 
                +++
  Lsa018449 357 RKA 359
                765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-30253361IPR015300DNA-binding pseudobarrel domain
CDDcd100174.63E-23257358No hitNo description
SuperFamilySSF1019361.11E-19257358IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.5E-22259360IPR003340B3 DNA binding domain
PfamPF023622.0E-16259358IPR003340B3 DNA binding domain
PROSITE profilePS5086311.321259360IPR003340B3 DNA binding domain
PROSITE profilePS5105013.287520570IPR011124Zinc finger, CW-type
PfamPF074967.0E-10525567IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 784 aa     Download sequence    Send to blast
XTAYEQLAFC ELFHLEDTGW RECTSCGKRL HCGCIASTAA IELLENGGVS CASCSNSLRR  60
DPSTSEDKLG ECGISVENSI GEIPSSSNKM LKQSNDDGQK YPLPSDNDDT STSQMKQEEI  120
FPISTFEPAH GTKSFKYRET TGGKDVIGSL VQTDLTMGLA SSSSSSQKSP FLLPLDGREL  180
NKPFQQGPWS RHILPKVPKS VFSQGFDANI GMNSQIRIAR PPVEGRIKNQ LLPRYWPRIT  240
EQELQQISGD SNATVVPLFE KVLSASDAGR IGRLVLPKAC AEAYFPPISQ PEGLPIRIQD  300
VKGKEWLFQF RFWPNNNSRM YVLEGVTPCI QSMQLKAGDT VTFSRMEPEG KLLMGFRKAS  360
VSASVQDSRM GAMHNGVFPS GSSPSLSGVE NLSNMSDYSG LLQSLKRNTD SHLNPLSRSM  420
SLTIGDASWH ANEKQGSKSR ADSFQPDKKR SRNISSKSKR LLIESQDALE LKYTWEELQD  480
MLTPPNTLNP TSVTIEDQDF EEYEEPPVFG KGSIFTARSS GEQEQWAQCD NCSKWRRLPI  540
DFLLPAKWTC QENVWDHMRS ACVAPDELGP RELDHLLRLA KEFHKWRNSM NQKPPPDQDQ  600
GENQNQNQAE PPPDPSVATT TKHPRHRPGC SCIVCSQPPS GKGKHKPNCT CNVCMTVKRR  660
FKTLMLRKQQ RQSEREAEIA EKNNQLKLGP TSNPKEEIEG VMKSQQSSGG GGKSQLDLNI  720
RPHPHVSMMS LLQAANQPLE TYMKQNGLTT LIPEPQGTSS GSQPLPQQQA SSTAQDEQNN  780
QNSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-1325836213120DNA-binding protein RAV1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768196.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
RefseqXP_016435545.10.0PREDICTED: B3 domain-containing transcription repressor VAL2-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A118JX320.0A0A118JX32_CYNCS; Uncharacterized protein
STRINGPOPTR_0016s14350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1